Conference Proceeding

Geodesic Graph Cut Based Retinal Fluid Segmentation in Optical Coherence Tomography

  • Hrvoje Bogunović (University of Iowa)
  • Michael D. Abràmoff (University of Iowa)
  • Milan Sonka (University of Iowa)


Age-related macular degeneration (AMD) is a leading cause of blindness in developed countries. Its most damaging form is characterized by accumulation of fluid inside the retina, whose quantification is of utmost importance for evaluating the disease progression. In this paper we propose an automated method for retinal fluid segmentation from 3D images acquired with optical coherence tomography (OCT). It combines a machine learning approach with an effective segmentation framework based on geodesic graph cut. After an image preprocessing step, an artificial neural network is trained based on textural features to assign to each voxel a probability of belonging to a fluid. The obtained probability maps are used to compute minimal geodesic distances from a set of identified seed points to the remaining unassigned voxels. Finally, the segmentation is solved optimally and efficiently using graph cut optimization. The method is evaluated on a clinical longitudinal dataset consisting of 30 OCT scans from 10 patients taken at 3 different stages of treatment. Manual annotations from two retinal specialists were taken as the gold standard. The segmentation method achieved mean precision of 0.88 and recall of 0.83, with the combined F1 score of 0.85. The segmented fluid volumes were within the measured inter-observer variability. The results demonstrate that the proposed method is a promising step towards accurate quantification of retinal fluid.

How to Cite:

Bogunović, H. & Abràmoff, M. D. & Sonka, M., (2015) “Geodesic Graph Cut Based Retinal Fluid Segmentation in Optical Coherence Tomography”, Proceedings of the Ophthalmic Medical Image Analysis International Workshop 2(2015), 49-56. doi:

Rights: Copyright © 2015 Hrvoje Bogunović, Michael D. Abràmoff, and Milan Sonka

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Published on
09 Oct 2015
Peer Reviewed